Research output per year
Research output per year
Search results
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2025
The relationship between CSF1R signaling, monocyte-macrophage differentiation and susceptibility to inflammatory bowel disease
Hume, D. A., M. Summers, K., O'BRIEN, C. & Pavli, P., Mar 2025, (Accepted/In press) In: CMGH Cellular and Molecular Gastroenterology and Hepatology. p. 1-27 27 p.Research output: Contribution to journal › Review article › peer-review
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2024
Diversity of antimicrobial-resistant bacteria isolated from Australian chicken and pork meat
Dixit, O. V. A., Behruznia, M., Preuss, A. L. & O'Brien, C. L., Feb 2024, In: Frontiers in Microbiology. 15, p. 1-15 15 p., 1347597.Research output: Contribution to journal › Article › peer-review
Open AccessFile29 Downloads (Pure) -
Prevention of pregnancy complications should be a priority
O'BRIEN, C., 1 Jun 2024, MJA Insight, p. 1-6 6 p.Research output: Contribution to Newspaper/Magazine/Bulletin › Article
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Reducing the Risk of Pre-Eclampsia in Women with Polycystic Ovary Syndrome Using a Combination of Pregnancy Screening, Lifestyle, and Medical Management Strategies
Parker, J., O'Brien, C., Yeoh, C., L. Gersh, F. & Brennecke, S., Mar 2024, In: Journal of Clinical Medicine. 13, 6, p. 1-31 31 p., 1774.Research output: Contribution to journal › Review article › peer-review
Open Access5 Citations (Scopus) -
The relationship between extreme inter-individual variation in macrophage gene expression and genetic susceptibility to inflammatory bowel disease
O'Brien, C. L., Summers, K. M., Martin, N. M., Carter-Cusack, D., Yang, Y., Barua, R., Dixit, O. V. A., Hume, D. A. & Pavli, P., Mar 2024, In: Human Genetics. 143, 3, p. 233-261 29 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)51 Downloads (Pure) -
2023
Comparative genomics and phenotypic studies to determine site-specificity of Escherichia coli in the lower gastrointestinal tract of humans
Barua, R., Pavli, P., Gordon, D. M. & O'Brien, C. L., 22 Jun 2023, In: Gut Microbes. 15, 1, p. 1-19 19 p., 2223332.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)46 Downloads (Pure) -
2022
A narrative review of the role of gastrointestinal dysbiosis in the pathogenesis of polycystic ovary syndrome
Parker, J., O'Brien, C. & Hawrelak, J., Jan 2022, In: Obstetrics & gynecology science. 65, 1, p. 14-28 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile29 Citations (Scopus)59 Downloads (Pure) -
Polycystic Ovary Syndrome: An Evolutionary Adaptation to Lifestyle and the Environment
Parker, J., O’brien, C., Hawrelak, J. & Gersh, F. L., 1 Feb 2022, In: International Journal of Environmental Research and Public Health. 19, 3, p. 1-25 1336.Research output: Contribution to journal › Article › peer-review
Open AccessFile56 Citations (Scopus)72 Downloads (Pure) -
Prevalence, diversity and genetic structure of Escherichia coli isolates from septic tanks
Behruznia, M., O'Brien, C. L. & Gordon, D. M., Feb 2022, In: Environmental Microbiology Reports. 14, 1, p. 138-146 9 p.Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
Review article: the future of microbiome-based therapeutics
Gulliver, E. L., Young, R. B., Chonwerawong, M., D'Adamo, G. L., Thomason, T., Widdop, J. T., Rutten, E. L., Rossetto Marcelino, V., Bryant, R. V., Costello, S. P., O'Brien, C. L., Hold, G. L., Giles, E. M. & Forster, S. C., 24 May 2022, In: Alimentary Pharmacology and Therapeutics. 56, 2, p. 192-208 17 p.Research output: Contribution to journal › Review article › peer-review
Open Access56 Citations (Scopus) -
2021
Australia IBD Microbiome (AIM) Study: protocol for a multicentre longitudinal prospective cohort study
Williams, A. J., Paramsothy, R., Wu, N., Ghaly, S., Leach, S., Paramsothy, S., Corte, C., O'Brien, C., Burke, C., Wark, G., Samocha-Bonet, D., Lambert, K., Ahlenstiel, G., Wasinger, V., Dutt, S., Pavli, P., Grimm, M., Lemberg, D., Connor, S. & Leong, R. & 1 others, , 16 Feb 2021, In: BMJ Open. 11, 2, p. 1-8 8 p., e042493.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Citations (Scopus)91 Downloads (Pure) -
Developmental origins and transgenerational inheritance of polycystic ovary syndrome
Parker, J., O'Brien, C. & Gersh, F., Dec 2021, In: Australian and New Zealand Journal of Obstetrics and Gynaecology. 61, 6, p. 922-926 5 p.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus) -
Evolutionary and genetic antecedents to the pathogenesis of polycystic ovary syndrome (PCOS)
Parker, J. & O'Brien, C., Mar 2021, In: Journal of the Australasian College of Nutritional and Environmental Medicine. 40, 1, p. 12-20 9 p.Research output: Contribution to journal › Article › peer-review
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Gut microbiome responses to dietary intake of grain-based fibres with the potential to modulate markers of metabolic disease: a systematic literature review
Williams, G. M., Tapsell, L. C., O'Brien, C., Tosh, S. M., Barrett, E. M. & Beck, E., Nov 2021, In: Nutrition Reviews. 79, 11, p. 1274–1292 19 p., 33369654.Research output: Contribution to journal › Article › peer-review
6 Citations (Scopus) -
2020
Microbiota in IBD
Aberg, M., O'Brien, C. & Hold, G. L., 2020, In: Microbiota in Health and Disease. p. 1-18 18 p.Research output: Contribution to journal › Review article › peer-review
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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
Touchon, M., Perrin, A., De Sousa, J. A. M., Vangchhia, B., Burn, S., O'Brien, C. L., Denamur, E., Gordon, D. & Rocha, E. P. C., 12 Jun 2020, In: PLoS Genetics. 16, 6, p. 1-43 43 p., e1008866.Research output: Contribution to journal › Article › peer-review
Open AccessFile126 Citations (Scopus)56 Downloads (Pure) -
Study of a classification algorithm for AIEC identification in geographically distinct E. coli strains
Camprubí-Font, C., Bustamante, P., Vidal, R., O'Brien, C., Barnich, N. & Martinez-Medina, M., 15 May 2020, In: Scientific Reports. 10, p. 1-7 7 p., 8094.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)43 Downloads (Pure) -
2019
Diversity and distribution of Klebsiella capsules in Escherichia coli
Nanayakkara, B. S., O'Brien, C. L. & Gordon, D. M., Apr 2019, In: Environmental Microbiology Reports. 11, 2, p. 107-117 11 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Phenotypic characteristics contributing to the enhanced growth of Escherichia coli bloom strains
Nanayakkara, B. S., O'Brien, C. L. & Gordon, D. M., 1 Dec 2019, In: Environmental Microbiology Reports. 11, 6, p. 817-824 8 p., 31642169.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Recent advances in gut Microbiota mediated therapeutic targets in inflammatory bowel diseases: Emerging modalities for future pharmacological implications
Shamoon, M., Martin, N. M. & O'Brien, C. L., Oct 2019, In: Pharmacological Research. 148, p. 1-12 12 p., 104344.Research output: Contribution to journal › Review article › peer-review
63 Citations (Scopus) -
2018
Prevalence of YersiniaSpecies in the Ileum of Crohn's Disease Patients and Controls
Baut, G. L., O'brien, C., Pavli, P., Roy, M., Seksik, P., Tréton, X., Nancey, S., Barnich, N., Bezault, M., Auzolle, C., Cazals-Hatem, D., Viala, J., Allez, M., Hugot, J. P. & Dumay, A., 21 Sept 2018, In: Frontiers in Cellular and Infection Microbiology. 8, SEP, p. 1-9 9 p., 336.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)37 Downloads (Pure) -
The microbiome of Crohn's disease aphthous ulcers
O'Brien, C. L., Kiely, C. J. & Pavli, P., 10 Oct 2018, In: Gut Pathogens. 10, 1, p. 1-8 8 p., 44.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)48 Downloads (Pure) -
The microbiome of translocated bacterial populations in patients with and without inflammatory bowel disease
Kiely, C. J., Pavli, P. & O'Brien, C. L., Nov 2018, In: Internal Medicine Journal. 48, 11, p. 1346-1354 9 p.Research output: Contribution to journal › Article › peer-review
17 Citations (Scopus) -
The role of inflammation in temporal shifts in the inflammatory bowel disease mucosal microbiome
Kiely, C. J., Pavli, P. & O'Brien, C. L., 2 Nov 2018, In: Gut Microbes. 9, 6, p. 477-485 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile40 Citations (Scopus)50 Downloads (Pure) -
Within-host evolution versus immigration as a determinant of Escherichia coli diversity in the human gastrointestinal tract
Dixit, O. V. A., O'Brien, C. L., Pavli, P. & Gordon, D. M., Mar 2018, In: Environmental Microbiology. 20, 3, p. 993-1001 9 p.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
2017
Comparative genomics of Crohn's disease-Associated adherent-invasive Escherichia coli
O'Brien, C. L., Bringer, M. A., Holt, K. E., Gordon, D. M., Dubois, A. L., Barnich, N., Darfeuille-Michaud, A. & Pavli, P., 1 Aug 2017, In: Gut. 66, 8, p. 1382-1389 8 p.Research output: Contribution to journal › Article › peer-review
79 Citations (Scopus) -
Fine-scale structure analysis shows epidemic patterns of clonal complex 95, a cosmopolitan Escherichia coli lineage responsible for extraintestinal infection
Gordon, D. M., Geyik, S., Clermont, O., O'Brien, C. L., Huang, S., Abayasekara, C., Rajesh, A., Kennedy, K., Collignon, P., Pavli, P., Rodriguez, C., Johnston, B. D., Johnson, J. R., Decousser, J. W. & Denamur, E., 1 May 2017, In: mSphere. 2, 3, p. 1-15 15 p., e00168-17.Research output: Contribution to journal › Article › peer-review
Open AccessFile30 Citations (Scopus)41 Downloads (Pure) -
2015
Escherichia coli diversity in the lower intestinal tract of humans
Gordon, D. M., O'Brien, C. L. & Pavli, P., 1 Aug 2015, In: Environmental Microbiology Reports. 7, 4, p. 642-648 7 p.Research output: Contribution to journal › Article › peer-review
35 Citations (Scopus) -
Host litter-associated gut dynamics affect Escherichia coli abundance and adhesion genotype in rats
Blyton, M. D. J., Herawati, N. A., O'Brien, C. L. & Gordon, D. M., 1 Jun 2015, In: Environmental Microbiology Reports. 7, 3, p. 583-589 7 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
Relative abundance of Mycobacterium in ovine Johne's disease
O Leu, A., Pavli, P., Gordon, D., Cave, J., Gowzdz, J. M., Linden, N., Rawlin, G., Allison, G. E. & O'Brien, C., 6 Mar 2015, In: Microbiology Australia. 36, 1, p. 1-5 5 p.Research output: Contribution to journal › Article › peer-review
Open Access -
2014
Detection of bacterial DNA in lymph nodes of Crohn's disease patients using high throughput sequencing
O'Brien, C. L., Pavli, P., Gordon, D. M. & Allison, G. E., 1 Oct 2014, In: Gut. 63, 10, p. 1596-1606 11 p.Research output: Contribution to journal › Article › peer-review
55 Citations (Scopus) -
2013
Impact of Colonoscopy Bowel Preparation on Intestinal Microbiota
O'Brien, C. L., Allison, G. E., Grimpen, F. & Pavli, P., 1 May 2013, In: PLoS One. 8, 5, p. 1-10 10 p., e62815.Research output: Contribution to journal › Article › peer-review
Open AccessFile80 Citations (Scopus)30 Downloads (Pure) -
The more the merrier: Faecalibacterium prausnitzii in Crohn's disease
O'Brien, C. L., Allison, G. E. & Pavli, P., May 2013, In: Journal of Gastroenterology and Hepatology (Australia). 28, 5, p. 757-759 3 p.Research output: Contribution to journal › Editorial
4 Citations (Scopus) -
2011
Effect of diet and gut dynamics on the establishment and persistence of Escherichia coli
O'Brien, C. L. & Gordon, D. M., May 2011, In: Microbiology. 157, 5, p. 1375-1384 10 p.Research output: Contribution to journal › Article › peer-review
Open Access18 Citations (Scopus) -
2008
Evidence for a human-specific Escherichia coli clone
Clermont, O., Lescat, M., O'Brien, C. L., Gordon, D. M., Tenaillon, O. & Denamur, E., Apr 2008, In: Environmental Microbiology. 10, 4, p. 1000-1006 7 p.Research output: Contribution to journal › Article › peer-review
Open Access87 Citations (Scopus) -
2006
Bacteriocin diversity and the frequency of multiple bacteriocin production in Escherichia coli
Gordon, D. M. & O'Brien, C. L., Nov 2006, In: Microbiology. 152, 11, p. 3239-3244 6 p.Research output: Contribution to journal › Article › peer-review
Open Access121 Citations (Scopus)