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  • Janine Deakin
2011

A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map

Wang, C., Deakin, J., Rens, W., Zenger, K., Belov, K., Marshall Graves, J. & Nicholas, F., 2011, In : BMC Genomics. 12:422, p. 1-12 12 p.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)

Wang, C., Webley, L., Wei, K., Wakefield, M., Patel, H., Deakin, J., Alsop, A., Marshall Graves, J., Cooper, D., Nicholas, F. & Zenger, K., 2011, In : BMC Genetics. 12:72, p. 1-16 16 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
3 Downloads (Pure)

BAC Libraries: Precious Resources for Marsupial and Monotreme Comparative Genomics

Deakin, J., 2011, Bacterial Artificial Chromosomes. Chatterjee, P. (ed.). Croatia: In-Tech, p. 1-22 22 p.

Research output: A Conference proceeding or a Chapter in BookChapter

Open Access
File
6 Downloads (Pure)

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

Renfree, M. B., Papenfuss, A., DEAKIN, J., Lindsay, J., Heider, T., Belov, K., Rens, W., Waters, P., Pharo, E., Shaw, G., Wong, E., Lefevre, C., Nicholas, K. R., Kuroki, Y., Wakefield, M., Zenger, K., Wang, C., Ferguson-Smith, M., Nicholas, F., Hickford, D. & 83 others, Yu, H., Short, K. R., Siddle, H., Frankenberg, S., Chew, K., Menzies, B., Stringer, J., Suzuki, S., Hore, T., Delbridge, M. L., Mohammadi, A., Schneider, N., Hu, Y., O'Hara, W., Nadaf, S., Wu, C., Feng, Z-P., Cocks, B., Wang, J., Flicek, P., Searle, S., Fairley, S., Beal, K., Herrero, J., Carone, D., Suzuki, Y., Sugano, S., Toyoda, A., Sakaki, Y., Kondo, S., Nishida, Y., Tatsumoto, S., Mandiou, I., Hsu, A., McColl, K., Lansdell, B., Weinstock, G., Kuczek, E., McGrath, A., Wilson, P., Men, A., Hazar-Rethinam, M., Hall, A., Davis, J., Wood, D., Williams, S., Sundaravadanam, Y., Muzny, D., Jhangiani, S., Lewis, L., Morgan, M., Okwuonu, G., Ruiz, S., Santibanez, J., Nazareth, L., Cree, A., Fowler, G., Kovar, C., Dinh, H., Joshi, V., Jing, C., Lara, F., Thornton, R., Chen, L., Deng, J., Liu, Y., Shen, J., Song, X-Z., Edson, J., Troon, C., Thomas, D., Stephens, A., Yapa, L., Levchenko, T., Gibbs, R. A., Cooper, D., Speed, T., Fujiyama, A., Graves, J. A. M., O’Neill, R., Pask, A., Forrest, S. & Worley, K., 2011, In : Genome Biology. 12:R81, p. 1-25 25 p.

Research output: Contribution to journalArticle

Open Access
File
116 Citations (Scopus)
1 Downloads (Pure)

Physical Mapping of Innate Immune Genes, Mucins and Lysozymes, and Other Non-Mucin Proteins in the Tammar Wallaby (Macropus eugenii)

Edwards, M., Hinds, L., Deane, E. & Deakin, J., 2011, In : Cytogenetic and Genome Research. 135, 2, p. 118-125 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

The tammar wallaby major histocompatibility complex shows evidence of past genomic instability

Siddle, H., Deakin, J., Coggill, P., Whilming, L., Harrow, J., Kaufman, J., Beck, S. & Belov, K., 2011, In : BMC Genomics. 12:421, p. 1-15 15 p.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
2 Downloads (Pure)
2012

A Comparative Genomics Approach to Understanding Transmissible Cancer in Tasmanian Devils

Deakin, J. & Belov, K., 2012, In : Annual Review of Genomics and Human Genetics. 13, p. 207-222 16 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation

Nadaf, S., Deakin, J., Gilbert, C., Robinson, T., Marshall Graves, J. & Waters, P., 2012, In : Chromosoma. 121, p. 71-78 8 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC

Cheng, Y., Stuart, A., Morris, K., Taylor, R., Siddle, H., Deakin, J., Jones, M., Amemiya, C. & Belov, K., 2012, In : BMC Genomics. 13:87, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
36 Citations (Scopus)

A review of complementary mechanisms which protect the developing marsupial pouch young

Edwards, M., Hinds, L., Deane, E. & Deakin, J., 2012, In : Developmental Comparative Immunology. 37, p. 213-220 8 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Extreme Telomere Length Dimorphism in the Tasmanian Devil and Related Marsupials Suggests Parental Control of Telomere Length

Bender, H., Murchison, E., Pickett, H., Deakin, J., Strong, M., Conlan, C., McMillan, D., Neumann, A., Greider, C., Hannon, G., Reddel, R. & Marshall Graves, J., 2012, In : PLoS One. 7, 9, p. 1-10 10 p.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
2 Downloads (Pure)

Genomic Restructuring in the Tasmanian Devil Facial Tumour: Chromosome Painting and Gene Mapping Provide Clues to Evolution of a Transmissible Tumour

Deakin, J., Bender, H., Pearse, A-M., Rens, W., O'Brien, P., Ferguson-Smith, M., Cheng, Y., Morris, K., Taylor, R., Stuart, A., Belov, K., Amemiya, C., Murchison, E., Papenfuss, A. & Marshall Graves, J., 2012, In : PLoS Genetics. 8, p. 1-16 16 p.

Research output: Contribution to journalArticle

Open Access
File
58 Citations (Scopus)
3 Downloads (Pure)

Marsupial Genome Sequences: Providing Insight into Evolution and Disease

Deakin, J., 2012, In : Scientifica. ID 543176, p. 1-22 22 p.

Research output: Contribution to journalArticle

Open Access
File
3 Downloads (Pure)

The Evolution of Marsupial and Monotreme Chromosomes

Deakin, J., Marshall Graves, J. & Rens, W., 2012, In : Cytogenetic and Genome Research. 137, p. 113-129 17 p.

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)
2013

Exceptionally high conservation of the MHC class I-related gene, MR1, among mammals

Tsukamoto, K., Deakin, J., Marshall Graves, J. & Hashimoto, K., 2013, In : Immunogenetics. 65, p. 115-124 10 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Genome Sequence of an Australian Kangaroo, Macropus eugenii

Deakin, J., 2013, Encyclopedia of life sciences. O'Daly, A. (ed.). United Kingdom: John Wiley & Sons, p. 1-25 25 p.

Research output: A Conference proceeding or a Chapter in BookChapter

Independent Evolution of Transcriptional Inactivation on Sex Chromosomes in Birds and Mammals

Livernois, A., Waters, S., Deakin, J., Marshall Graves, J. & Waters, P., 2013, In : PLoS Genetics. 9, 7, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
File
18 Citations (Scopus)
4 Downloads (Pure)

In Vivo Function and Evolution of the Eutherian-Specific Pluripotency Marker UTF1

Nishimoto, M., Katano, M., Yamagishi, T., Hishida, T., Kamon, M., Suzuki, A., Hirasaki, M., Nabeshima, Y., Nabeshima, Y., Katsura, Y., Satta, Y., Deakin, J., Marshall Graves, J., Kuroki, Y., Ono, R., Ishino, F., Ema, M., Takahashi, S., Kato, H. & Okuda, A., 2013, In : PLoS One. 8, p. 1-14 14 p.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
5 Downloads (Pure)

Marsupial X chromosome inactivation: past, present and future

Deakin, J., 2013, In : Australian Journal of Zoology. 61, p. 13-23 11 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Reconstruction of the ancestral marsupial karyotype from comparative gene maps

DEAKIN, J., Delbridge, M. L., Koina, E., Harley, N., Alsop, A. E., Wang, C., Patel, V. S. & Graves, J. A. M., 2013, In : BMC Evolutionary Biology. 13:258, p. 1-15 15 p.

Research output: Contribution to journalArticle

Open Access
File
16 Citations (Scopus)

Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1

EZAZ, T., O'Meally, D., MATSUBARA, K., Edwards, M., HOLLELEY, C., DEAKIN, J., Graves, J., GEORGES, A., Edwards, S. V. & SARRE, S., 2013, In : BMC Genomics. 14:899, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
File
23 Citations (Scopus)
6 Downloads (Pure)

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

Mould, A., Pang, Z., Pakusch, M., Tonks, I., Stark, M., Carrie, D., Mukhopadhyay, P., Seidel, A., Ellis, J., Deakin, J., Wakefield, M., Krause, L., Blewitt, M. & Kay, G., 2013, In : Epigenetics and Chromatin. 6:19, p. 1-16 16 p.

Research output: Contribution to journalArticle

Open Access
File
51 Citations (Scopus)
1 Downloads (Pure)

The Evolution of Mammalian X Chromosomes and X Chromosome Inactivation

Delgado, C. & Deakin, J., 2013, Sex Chromosomes: New Research. D'Aquino, M. & Stallone, V. (eds.). New York: Nova Science Publishers, p. 1-52 52 p.

Research output: A Conference proceeding or a Chapter in BookChapter

The marsupial pouch: implications for reproductive success and mammalian evolution

Edwards, M. & Deakin, J., 2013, In : Australian Journal of Zoology. 61, p. 41-47 7 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Towards an understanding of the genetic basis behind 1080 (sodium fluoroacetate) tolerance and an investigation of the candidate gene ACO2

Deakin, J., Cooper, D., Sinclair, J., Herbert, C., Renfree, M. & Wakefield, M., 2013, In : Australian Journal of Zoology. 61, p. 69-77 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
2014

Comparative epigenomics: an emerging field with breakthrough potential to understand evolution of epigenetic regulation

DEAKIN, J., DOMASCHENZ, R., LIM, C., EZAZ, T. & RAO, S., 2014, In : AIMS Genetics. 1, 1, p. 34-54 21 p.

Research output: Contribution to journalArticle

Open Access
File
3 Downloads (Pure)

Comparative Genome Analyses Reveal Distinct Structure in the Saltwater Crocodile MHC

Jaratlerdsiri, W., DEAKIN, J., Godinez.M, R., Shan, X., Peterson, D., Marthey, S., Lyons, E., McCarthy, F., Isberg, S., Higgins, D., Chong, A., St John, J., Glenn, T., Ray, D. A. & Gongora, J., 2014, In : PLoS One. 9, 12, p. 1-33 33 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
4 Downloads (Pure)

Pathogenesis and molecular biology of a transmissible tumor in the Tasmanian Devil

Bender, H., Marshall Graves, J. & DEAKIN, J., 2014, In : Annual Review of Animal Biosciences. 2, p. 165-187 23 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Repetitive sequence and sex chromosome evolution in vertebrates

EZAZ, T. & DEAKIN, J., 2014, In : Advances in Evolutionary Biology. 2014, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
File
2 Downloads (Pure)

Tracing the evolution of amniote chromosomes

DEAKIN, J. & EZAZ, T., 2014, In : Chromosoma. 123, 3, p. 201-216 16 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
14 Downloads (Pure)
2015

A peculiar lamin in a peculiar mammal: Expression of lamin LIII in platypus (Ornithorhynchus anatinus)

Peter, A., Khandekar, S., DEAKIN, J. & Stick, R., 2015, In : European Journal of Cell Biology. 94, 11, p. 522-530 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes

DEAKIN, J., 2015, In : Molecular Cytogenetics. 8, 1, p. 1-11 11 p., 74.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
1 Downloads (Pure)

High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps

GEORGES, A., Li, Q., Lian, J., O'Meally, D., DEAKIN, J., Wang, Z., Zhang, P., Fujita, M., Patel, H., Zhou, Y., MATSUBARA, K., Waters, P., Graves, J., SARRE, S. & Zhang, G., 2015, In : Giga Science. 4, 1, p. 1-10 10 p., 45.

Research output: Contribution to journalArticle

Open Access
File
44 Citations (Scopus)
4 Downloads (Pure)

Immunofluorescent staining reveals hypermethylation of microchromosomes in the central bearded dragon, Pogona vitticeps

DOMASCHENZ, R., Livernois, A., RAO, S., EZAZ, T. & DEAKIN, J., 2015, In : Molecular Cytogenetics. 8, 1, p. 104-112 9 p., 104.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
1 Downloads (Pure)

Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage

Papenfuss, A., Feng, Z-P., Krasnec, K., DEAKIN, J., Baker, M. & Miller, R., 2015, In : BMC Genomics. 16, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
1 Downloads (Pure)
2016

Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

DEAKIN, J., Edwards, M., Patel, H., O'Meally, D., Lian, J., Rachael, S., Ryan, S., LIVERNOIS, A., Azad, B., HOLLELEY, C., Li, Q. & GEORGES, A., 2016, In : BMC Genomics. 17, 1, p. 447-461 15 p., 447.

Research output: Contribution to journalArticle

Open Access
17 Citations (Scopus)

Evolution and comparative analysis of the bat MHC-I region

Ng, J., Tachedjian, M., DEAKIN, J., Wynne, J. W., Cui, J., Haring, V. R., Broz, I., Chen, H., Belov, K., Wang, L. & Baker, M. L., 2016, In : Scientific Reports. 6, Online, p. 1-18 18 p.

Research output: Contribution to journalArticle

Open Access
File
19 Citations (Scopus)
3 Downloads (Pure)

Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data

LIVERNOIS, A., HARDY, K., DOMASCHENZ, R., Papanicolaou, A., GEORGES, A., SARRE, S., RAO, S., EZAZ, T. & DEAKIN, J., 2016, In : Immunogenetics. 68, 9, p. 719-731 13 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease

DEAKIN, J. & Kruger-Andrzejewska, M., 2016, In : Chromosoma. 125, 4, p. 633-644 12 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
Open Access
File
7 Downloads (Pure)
2017

Chromosomal speciation in the genomics era: disentangling phylogenetic evolution of rock-wallabies

Potter, S., Bragg, J., Blom, M., DEAKIN, J., Kirkpatrick, M., Eldridge, M. & Moritz, C., 2017, In : Frontiers in Genetics. 8, p. 1-18 18 p.

Research output: Contribution to journalArticle

Open Access
File
23 Citations (Scopus)
7 Downloads (Pure)

Identification of candidate genes for devil facial tumour disease tumourigenesis

Taylor, R. L., Zhang, Y., Schöning, J. P. & Deakin, J. E., 1 Dec 2017, In : Scientific Reports. 7, 1, p. 8761 8761.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
1 Downloads (Pure)
2018

Adaptation and conservation insights from the koala genome

Johnson, R. N., O’Meally, D., Chen, Z., Etherington, G. J., Ho, S. Y. W., Nash, W. J., Grueber, C. E., Cheng, Y., Whittington, C. M., Dennison, S., Peel, E., Haerty, W., O’Neill, R. J., Colgan, D., Russell, T. L., Alquezar-Planas, D. E., Attenbrow, V., Bragg, J. G., Brandies, P. A., Chong, A. Y. Y. & 34 others, Deakin, J. E., Di Palma, F., Duda, Z., Eldridge, M. D. B., Ewart, K. M., Hogg, C. J., Frankham, G. J., Georges, A., Gillett, A. K., Govendir, M., Greenwood, A. D., Hayakawa, T., Helgen, K. M., Hobbs, M., Holleley, C. E., Heider, T. N., Jones, E. A., King, A., Madden, D., Graves, J. A. M., Morris, K. M., Neaves, L. E., Patel, H. R., Polkinghorne, A., Renfree, M. B., Robin, C., Salinas, R., Tsangaras, K., Waters, P. D., Waters, S. A., Wright, B., Wilkins, M. R., Timms, P. & Belov, K., Aug 2018, In : Nature Genetics. 50, 8, p. 1102-1111 10 p.

Research output: Contribution to journalArticle

Open Access
File
38 Citations (Scopus)
7 Downloads (Pure)

Chromosome Evolution in Marsupials

Deakin, J. E., 6 Feb 2018, In : Genes. 9, 2, p. 1-15 15 p., 72.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
65 Downloads (Pure)

Cytogenetics: An important inclusion in the conservation genetics toolbox

Potter, S. & Deakin, J. E., 20 Jul 2018, In : Pacific Conservation Biology. 24, 3, p. 280-288 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

The methylation and telomere landscape in two families of marsupials with different rates of chromosome evolution

Ingles, E. D. & Deakin, J. E., 12 Dec 2018, In : Chromosome Research. 26, 4, p. 317-332 16 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2019

Chromosomics: Bridging the Gap between Genomes and Chromosomes

Deakin, J. E., Potter, S., O'Neill, R., Ruiz-Herrera, A., Cioffi, M. B., Eldridge, M. D. B., Fukui, K., Marshall Graves, J. A., Griffin, D., Grutzner, F., Kratochvíl, L., Miura, I., Rovatsos, M., Srikulnath, K., Wapstra, E. & Ezaz, T., 20 Aug 2019, In : Genes. 10, 8, p. 1-17 17 p.

Research output: Contribution to journalArticle

Open Access
File
10 Downloads (Pure)

Marsupial Chromosome Evolution

DEAKIN, J., 15 May 2019, eLS. Chichester, England: John Wiley & Sons, p. 1-8 8 p. (eLS).

Research output: A Conference proceeding or a Chapter in BookEntry for encyclopedia/dictionary

Marsupial chromosomics: bridging the gap between genomes and chromosomes

Deakin, J. E. & Potter, S., 2019, In : Reproduction, Fertility and Development. 31, 7, p. 1189-1202 14 p.

Research output: Contribution to journalArticle