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2019
Chromosomics: Bridging the Gap between Genomes and Chromosomes
Deakin, J. E., Potter, S., O'Neill, R., Ruiz-Herrera, A., Cioffi, M. B., Eldridge, M. D. B., Fukui, K., Marshall Graves, J. A., Griffin, D., Grutzner, F., Kratochvíl, L., Miura, I., Rovatsos, M., Srikulnath, K., Wapstra, E. & Ezaz, T., 20 Aug 2019, In: Genes. 10, 8, p. 1-17 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)16 Downloads (Pure) -
Marsupial Chromosome Evolution
DEAKIN, J., 15 May 2019, eLS. Chichester, England: John Wiley & Sons, p. 1-8 8 p. (eLS).Research output: A Conference proceeding or a Chapter in Book › Entry for encyclopedia/dictionary › peer-review
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Marsupial chromosomics: bridging the gap between genomes and chromosomes
Deakin, J. E. & Potter, S., 2019, In: Reproduction, Fertility and Development. 31, 7, p. 1189-1202 14 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Sexual conflict in action: An antagonistic relationship between maternal and paternal sex allocation in the tammar wallaby, Notamacropus eugenii
Edwards, A. M., Cameron, E. Z., DEAKIN, J., EZAZ, T., Pereira, J. E., Ferguson-Smith, M. & Robert, K. A., 5 Apr 2019, In: Ecology and Evolution. 9, 8, p. 4340-4348 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Understanding the Evolution of Reptile Chromosomes through Applications of Combined Cytogenetics and Genomics Approaches
Deakin, J. E. & Ezaz, T., 2019, In: Cytogenetic and Genome Research. 157, 1-2, p. 7-20 14 p.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
2018
Adaptation and conservation insights from the koala genome
Johnson, R. N., O’Meally, D., Chen, Z., Etherington, G. J., Ho, S. Y. W., Nash, W. J., Grueber, C. E., Cheng, Y., Whittington, C. M., Dennison, S., Peel, E., Haerty, W., O’Neill, R. J., Colgan, D., Russell, T. L., Alquezar-Planas, D. E., Attenbrow, V., Bragg, J. G., Brandies, P. A., Chong, A. Y. Y. & 34 others, , Aug 2018, In: Nature Genetics. 50, 8, p. 1102-1111 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile59 Citations (Scopus)11 Downloads (Pure) -
Chromosome Evolution in Marsupials
Deakin, J. E., 6 Feb 2018, In: Genes. 9, 2, p. 1-15 15 p., 72.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)83 Downloads (Pure) -
Cytogenetics: An important inclusion in the conservation genetics toolbox
Potter, S. & Deakin, J. E., 20 Jul 2018, In: Pacific Conservation Biology. 24, 3, p. 280-288 9 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
The methylation and telomere landscape in two families of marsupials with different rates of chromosome evolution
Ingles, E. D. & Deakin, J. E., 12 Dec 2018, In: Chromosome Research. 26, 4, p. 317-332 16 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
2016
Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome
DEAKIN, J., Edwards, M., Patel, H., O'Meally, D., Lian, J., Rachael, S., Ryan, S., LIVERNOIS, A., Azad, B., HOLLELEY, C., Li, Q. & GEORGES, A., 2016, In: BMC Genomics. 17, 1, p. 447-461 15 p., 447.Research output: Contribution to journal › Article › peer-review
Open Access20 Citations (Scopus) -
Evolution and comparative analysis of the bat MHC-I region
Ng, J., Tachedjian, M., DEAKIN, J., Wynne, J. W., Cui, J., Haring, V. R., Broz, I., Chen, H., Belov, K., Wang, L. & Baker, M. L., 2016, In: Scientific Reports. 6, Online, p. 1-18 18 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Scopus)8 Downloads (Pure) -
Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data
LIVERNOIS, A., HARDY, K., DOMASCHENZ, R., Papanicolaou, A., GEORGES, A., SARRE, S., RAO, S., EZAZ, T. & DEAKIN, J., 2016, In: Immunogenetics. 68, 9, p. 719-731 13 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease
DEAKIN, J. & Kruger-Andrzejewska, M., 2016, In: Chromosoma. 125, 4, p. 633-644 12 p.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
Telomeres, species differences, and unusual telomeres in vertebrates: presenting challenges and opportunities to understanding telomere dynamics
Ingles, E. & DEAKIN, J., 2016, In: AIMS Genetics. 3, p. 1-24 24 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2015
A peculiar lamin in a peculiar mammal: Expression of lamin LIII in platypus (Ornithorhynchus anatinus)
Peter, A., Khandekar, S., DEAKIN, J. & Stick, R., 2015, In: European Journal of Cell Biology. 94, 11, p. 522-530 9 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes
DEAKIN, J., 2015, In: Molecular Cytogenetics. 8, 1, p. 1-11 11 p., 74.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)4 Downloads (Pure) -
High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps
GEORGES, A., Li, Q., Lian, J., O'Meally, D., DEAKIN, J., Wang, Z., Zhang, P., Fujita, M., Patel, H., Zhou, Y., MATSUBARA, K., Waters, P., Graves, J., SARRE, S. & Zhang, G., 2015, In: Giga Science. 4, 1, p. 1-10 10 p., 45.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Citations (Scopus)4 Downloads (Pure) -
Immunofluorescent staining reveals hypermethylation of microchromosomes in the central bearded dragon, Pogona vitticeps
DOMASCHENZ, R., Livernois, A., RAO, S., EZAZ, T. & DEAKIN, J., 2015, In: Molecular Cytogenetics. 8, 1, p. 104-112 9 p., 104.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)3 Downloads (Pure) -
Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage
Papenfuss, A., Feng, Z-P., Krasnec, K., DEAKIN, J., Baker, M. & Miller, R., 2015, In: BMC Genomics. 16, 1, p. 1-13 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)5 Downloads (Pure) -
2014
Comparative epigenomics: an emerging field with breakthrough potential to understand evolution of epigenetic regulation
DEAKIN, J., DOMASCHENZ, R., LIM, C., EZAZ, T. & RAO, S., 2014, In: AIMS Genetics. 1, 1, p. 34-54 21 p.Research output: Contribution to journal › Article › peer-review
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Comparative Genome Analyses Reveal Distinct Structure in the Saltwater Crocodile MHC
Jaratlerdsiri, W., DEAKIN, J., Godinez.M, R., Shan, X., Peterson, D., Marthey, S., Lyons, E., McCarthy, F., Isberg, S., Higgins, D., Chong, A., St John, J., Glenn, T., Ray, D. A. & Gongora, J., 2014, In: PLoS One. 9, 12, p. 1-33 33 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)7 Downloads (Pure) -
Pathogenesis and molecular biology of a transmissible tumor in the Tasmanian Devil
Bender, H., Marshall Graves, J. & DEAKIN, J., 2014, In: Annual Review of Animal Biosciences. 2, p. 165-187 23 p.Research output: Contribution to journal › Article › peer-review
13 Citations (Scopus) -
Repetitive sequence and sex chromosome evolution in vertebrates
EZAZ, T. & DEAKIN, J., 2014, In: Advances in Evolutionary Biology. 2014, 1, p. 1-9 9 p.Research output: Contribution to journal › Article › peer-review
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Tracing the evolution of amniote chromosomes
DEAKIN, J. & EZAZ, T., 2014, In: Chromosoma. 123, 3, p. 201-216 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)16 Downloads (Pure) -
2013
Exceptionally high conservation of the MHC class I-related gene, MR1, among mammals
Tsukamoto, K., Deakin, J., Marshall Graves, J. & Hashimoto, K., 2013, In: Immunogenetics. 65, p. 115-124 10 p.Research output: Contribution to journal › Article › peer-review
56 Citations (Scopus) -
Genome Sequence of an Australian Kangaroo, Macropus eugenii
Deakin, J., 2013, Encyclopedia of life sciences. O'Daly, A. (ed.). United Kingdom: John Wiley & Sons, p. 1-25 25 p.Research output: A Conference proceeding or a Chapter in Book › Chapter
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Independent Evolution of Transcriptional Inactivation on Sex Chromosomes in Birds and Mammals
Livernois, A., Waters, S., Deakin, J., Marshall Graves, J. & Waters, P., 2013, In: PLoS Genetics. 9, 7, p. 1-9 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)8 Downloads (Pure) -
In Vivo Function and Evolution of the Eutherian-Specific Pluripotency Marker UTF1
Nishimoto, M., Katano, M., Yamagishi, T., Hishida, T., Kamon, M., Suzuki, A., Hirasaki, M., Nabeshima, Y., Nabeshima, Y., Katsura, Y., Satta, Y., Deakin, J., Marshall Graves, J., Kuroki, Y., Ono, R., Ishino, F., Ema, M., Takahashi, S., Kato, H. & Okuda, A., 2013, In: PLoS One. 8, p. 1-14 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)8 Downloads (Pure) -
Marsupial X chromosome inactivation: past, present and future
Deakin, J., 2013, In: Australian Journal of Zoology. 61, p. 13-23 11 p.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
Reconstruction of the ancestral marsupial karyotype from comparative gene maps
DEAKIN, J., Delbridge, M. L., Koina, E., Harley, N., Alsop, A. E., Wang, C., Patel, V. S. & Graves, J. A. M., 2013, In: BMC Evolutionary Biology. 13:258, p. 1-15 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus) -
Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1
EZAZ, T., O'Meally, D., MATSUBARA, K., Edwards, M., HOLLELEY, C., DEAKIN, J., Graves, J., GEORGES, A., Edwards, S. V. & SARRE, S., 2013, In: BMC Genomics. 14:899, p. 1-13 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile29 Citations (Scopus)7 Downloads (Pure) -
Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation
Mould, A., Pang, Z., Pakusch, M., Tonks, I., Stark, M., Carrie, D., Mukhopadhyay, P., Seidel, A., Ellis, J., Deakin, J., Wakefield, M., Krause, L., Blewitt, M. & Kay, G., 2013, In: Epigenetics and Chromatin. 6:19, p. 1-16 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile56 Citations (Scopus)2 Downloads (Pure) -
The Evolution of Mammalian X Chromosomes and X Chromosome Inactivation
Delgado, C. & Deakin, J., 2013, Sex Chromosomes: New Research. D'Aquino, M. & Stallone, V. (eds.). New York: Nova Science Publishers, p. 1-52 52 p.Research output: A Conference proceeding or a Chapter in Book › Chapter
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The marsupial pouch: implications for reproductive success and mammalian evolution
Edwards, M. & Deakin, J., 2013, In: Australian Journal of Zoology. 61, p. 41-47 7 p.Research output: Contribution to journal › Article › peer-review
8 Citations (Scopus) -
Towards an understanding of the genetic basis behind 1080 (sodium fluoroacetate) tolerance and an investigation of the candidate gene ACO2
Deakin, J., Cooper, D., Sinclair, J., Herbert, C., Renfree, M. & Wakefield, M., 2013, In: Australian Journal of Zoology. 61, p. 69-77 9 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
2012
A Comparative Genomics Approach to Understanding Transmissible Cancer in Tasmanian Devils
Deakin, J. & Belov, K., 2012, In: Annual Review of Genomics and Human Genetics. 13, p. 207-222 16 p.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus) -
A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation
Nadaf, S., Deakin, J., Gilbert, C., Robinson, T., Marshall Graves, J. & Waters, P., 2012, In: Chromosoma. 121, p. 71-78 8 p.Research output: Contribution to journal › Article › peer-review
23 Citations (Scopus) -
Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC
Cheng, Y., Stuart, A., Morris, K., Taylor, R., Siddle, H., Deakin, J., Jones, M., Amemiya, C. & Belov, K., 2012, In: BMC Genomics. 13:87, p. 1-13 13 p.Research output: Contribution to journal › Article › peer-review
Open Access36 Citations (Scopus) -
A review of complementary mechanisms which protect the developing marsupial pouch young
Edwards, M., Hinds, L., Deane, E. & Deakin, J., 2012, In: Developmental Comparative Immunology. 37, p. 213-220 8 p.Research output: Contribution to journal › Article › peer-review
25 Citations (Scopus) -
Extreme Telomere Length Dimorphism in the Tasmanian Devil and Related Marsupials Suggests Parental Control of Telomere Length
Bender, H., Murchison, E., Pickett, H., Deakin, J., Strong, M., Conlan, C., McMillan, D., Neumann, A., Greider, C., Hannon, G., Reddel, R. & Marshall Graves, J., 2012, In: PLoS One. 7, 9, p. 1-10 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)5 Downloads (Pure) -
Genomic Restructuring in the Tasmanian Devil Facial Tumour: Chromosome Painting and Gene Mapping Provide Clues to Evolution of a Transmissible Tumour
Deakin, J., Bender, H., Pearse, A-M., Rens, W., O'Brien, P., Ferguson-Smith, M., Cheng, Y., Morris, K., Taylor, R., Stuart, A., Belov, K., Amemiya, C., Murchison, E., Papenfuss, A. & Marshall Graves, J., 2012, In: PLoS Genetics. 8, p. 1-16 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile60 Citations (Scopus)6 Downloads (Pure) -
Marsupial Genome Sequences: Providing Insight into Evolution and Disease
Deakin, J., 2012, In: Scientifica. ID 543176, p. 1-22 22 p.Research output: Contribution to journal › Article › peer-review
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The Evolution of Marsupial and Monotreme Chromosomes
Deakin, J., Marshall Graves, J. & Rens, W., 2012, In: Cytogenetic and Genome Research. 137, p. 113-129 17 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
2011
A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map
Wang, C., Deakin, J., Rens, W., Zenger, K., Belov, K., Marshall Graves, J. & Nicholas, F., 2011, In: BMC Genomics. 12:422, p. 1-12 12 p.Research output: Contribution to journal › Article › peer-review
Open Access13 Citations (Scopus) -
A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)
Wang, C., Webley, L., Wei, K., Wakefield, M., Patel, H., Deakin, J., Alsop, A., Marshall Graves, J., Cooper, D., Nicholas, F. & Zenger, K., 2011, In: BMC Genetics. 12:72, p. 1-16 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Citations (Scopus)3 Downloads (Pure) -
BAC Libraries: Precious Resources for Marsupial and Monotreme Comparative Genomics
Deakin, J., 2011, Bacterial Artificial Chromosomes. Chatterjee, P. (ed.). Croatia: In-Tech, p. 1-22 22 p.Research output: A Conference proceeding or a Chapter in Book › Chapter
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Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development
Renfree, M. B., Papenfuss, A., DEAKIN, J., Lindsay, J., Heider, T., Belov, K., Rens, W., Waters, P., Pharo, E., Shaw, G., Wong, E., Lefevre, C., Nicholas, K. R., Kuroki, Y., Wakefield, M., Zenger, K., Wang, C., Ferguson-Smith, M., Nicholas, F., Hickford, D. & 83 others, , 2011, In: Genome Biology. 12:R81, p. 1-25 25 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile121 Citations (Scopus)3 Downloads (Pure) -
Physical Mapping of Innate Immune Genes, Mucins and Lysozymes, and Other Non-Mucin Proteins in the Tammar Wallaby (Macropus eugenii)
Edwards, M., Hinds, L., Deane, E. & Deakin, J., 2011, In: Cytogenetic and Genome Research. 135, 2, p. 118-125 8 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
The tammar wallaby major histocompatibility complex shows evidence of past genomic instability
Siddle, H., Deakin, J., Coggill, P., Whilming, L., Harrow, J., Kaufman, J., Beck, S. & Belov, K., 2011, In: BMC Genomics. 12:421, p. 1-15 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)4 Downloads (Pure)