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• 2020

  Comparative cytogenetic mapping and telomere analysis provide evolutionary predictions for devil facial tumour 2

  Ingles, E. D. & Deakin, J. E., 1 May 2020, In: Genes. 11, 5, p. 1-17 17 p., 480.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Telomere
  • Cytogenetics
  • Chromosomes
  • Neoplasms
  • Chromosome Mapping
  6 Downloads (Pure)

• Evolution of Marsupial Genomes

  Deakin, J. E. & O'Neill, R. J., 15 Feb 2020, In: Annual Review of Animal Biosciences. 8, 1, p. 25-45 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Marsupialia
  • Metatheria
  • Genome
  • genome
  • Chromosomes

• Identification of Y chromosome markers in the eastern three-lined skink (Bassiana duperreyi) using in silico whole genome subtraction

  Dissanayake, D. S. B., Holleley, C. E., Hill, L. K., O'Meally, D., Deakin, J. E. & Georges, A., 29 Sep 2020, In: BMC Genomics. 21, 1, p. 1-12 12 p., 667.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Sex Chromosomes
  • Y Chromosome
  • Genetic Markers
  • Computer Simulation
  • Genome

• The oz mammals genomics (OMG) initiative: Developing genomic resources for mammal conservation at a continental scale

  Eldridge, M. D. B., Deakin, J. E., MacDonald, A. J., Byrne, M., Fitzgerald, A., Johnson, R. N., Moritz, C., Palmer, S. & Young, A., 1 Jan 2020, In: Australian Zoologist. 40, 3, p. 505-509 5 p.

  Research output: Contribution to journal › Short survey › peer-review

  • mammals
  • genomics
  1 Citation (Scopus)
• 2019

  Chromosomics: Bridging the Gap between Genomes and Chromosomes

  Deakin, J. E., Potter, S., O'Neill, R., Ruiz-Herrera, A., Cioffi, M. B., Eldridge, M. D. B., Fukui, K., Marshall Graves, J. A., Griffin, D., Grutzner, F., Kratochvíl, L., Miura, I., Rovatsos, M., Srikulnath, K., Wapstra, E. & Ezaz, T., 20 Aug 2019, In: Genes. 10, 8, p. 1-17 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Chromosomes
  • Genome
  • Cytogenetics
  • Cell Biology
  • Eutheria
  18 Citations (Scopus)

  16 Downloads (Pure)

• Marsupial Chromosome Evolution

  DEAKIN, J., 15 May 2019, eLS. Chichester, England: John Wiley & Sons, p. 1-8 8 p. (eLS).

  Research output: A Conference proceeding or a Chapter in Book › Entry for encyclopedia/dictionary › peer-review

  • Metatheria
  • chromosomes
  • Dasyuridae
  • Macropodidae
  • karyotyping

• Marsupial chromosomics: bridging the gap between genomes and chromosomes

  Deakin, J. E. & Potter, S., 2019, In: Reproduction, Fertility and Development. 31, 7, p. 1189-1202 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Marsupialia
  • Metatheria
  • Chromosomes
  • Genome
  • chromosomes
  1 Citation (Scopus)

• Sexual conflict in action: An antagonistic relationship between maternal and paternal sex allocation in the tammar wallaby, Notamacropus eugenii

  Edwards, A. M., Cameron, E. Z., DEAKIN, J., EZAZ, T., Pereira, J. E., Ferguson-Smith, M. & Robert, K. A., 5 Apr 2019, In: Ecology and Evolution. 9, 8, p. 4340-4348 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • sexual conflict
  • sex allocation
  • Macropus eugenii
  • sex ratio
  • sperm

• Understanding the Evolution of Reptile Chromosomes through Applications of Combined Cytogenetics and Genomics Approaches

  Deakin, J. E. & Ezaz, T., 2019, In: Cytogenetic and Genome Research. 157, 1-2, p. 7-20 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Reptiles
  • Genomics
  • Cytogenetics
  • Chromosomes
  • Sex Chromosomes
  11 Citations (Scopus)
• 2017

  Chromosomal speciation in the genomics era: disentangling phylogenetic evolution of rock-wallabies

  Potter, S., Bragg, J., Blom, M., DEAKIN, J., Kirkpatrick, M., Eldridge, M. & Moritz, C., 2017, In: Frontiers in Genetics. 8, p. 1-18 18 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  31 Citations (Scopus)

  13 Downloads (Pure)

• Identification of candidate genes for devil facial tumour disease tumourigenesis

  Taylor, R. L., Zhang, Y., Schöning, J. P. & Deakin, J. E., 1 Dec 2017, In: Scientific Reports. 7, 1, p. 8761 8761.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Genetic Association Studies
  • Chromosomes, Human, Pair 1
  • Neoplasms
  • Genes
  • Schwann Cells
  11 Citations (Scopus)

  2 Downloads (Pure)

• Implications of monotreme and marsupial chromosome evolution on sex determination and differentiation

  DEAKIN, J., 2017, In: General and Comparative Endocrinology. 244, p. 130-138 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Marsupialia
  • Sex Differentiation
  • Metatheria
  • Chromosomes
  • chromosomes
• 2016

  Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

  DEAKIN, J., Edwards, M., Patel, H., O'Meally, D., Lian, J., Rachael, S., Ryan, S., LIVERNOIS, A., Azad, B., HOLLELEY, C., Li, Q. & GEORGES, A., 2016, In: BMC Genomics. 17, 1, p. 447-461 15 p., 447.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Chromosomes
  • Genome
  • Lizards
  • Cytogenetics
  • Sex Chromosomes
  20 Citations (Scopus)

• Evolution and comparative analysis of the bat MHC-I region

  Ng, J., Tachedjian, M., DEAKIN, J., Wynne, J. W., Cui, J., Haring, V. R., Broz, I., Chen, H., Belov, K., Wang, L. & Baker, M. L., 2016, In: Scientific Reports. 6, Online, p. 1-18 18 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Chiroptera
  • Genes
  • Eutheria
  • Peptides
  • Infection Control
  20 Citations (Scopus)

  8 Downloads (Pure)

• Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data

  LIVERNOIS, A., HARDY, K., DOMASCHENZ, R., Papanicolaou, A., GEORGES, A., SARRE, S., RAO, S., EZAZ, T. & DEAKIN, J., 2016, In: Immunogenetics. 68, 9, p. 719-731 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Interleukins
  • Lizards
  • RNA
  • Reptiles
  • Cytokines
  2 Citations (Scopus)

• Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease

  DEAKIN, J. & Kruger-Andrzejewska, M., 2016, In: Chromosoma. 125, 4, p. 633-644 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Marsupialia
  • Macropodidae
  • Chromosomes
  • Karyotype
  • Chromosomal Instability
  5 Citations (Scopus)

• Telomeres, species differences, and unusual telomeres in vertebrates: presenting challenges and opportunities to understanding telomere dynamics

  Ingles, E. & DEAKIN, J., 2016, In: AIMS Genetics. 3, p. 1-24 24 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • telomeres
  • interspecific variation
  • vertebrates
  • Metatheria
  • life history
  15 Downloads (Pure)
• 2015

  A peculiar lamin in a peculiar mammal: Expression of lamin LIII in platypus (Ornithorhynchus anatinus)

  Peter, A., Khandekar, S., DEAKIN, J. & Stick, R., 2015, In: European Journal of Cell Biology. 94, 11, p. 522-530 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Platypus
  • Lamins
  • Mammals
  • Genes
  • Vertebrates
  1 Citation (Scopus)

• Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes

  DEAKIN, J., 2015, In: Molecular Cytogenetics. 8, 1, p. 1-11 11 p., 74.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • DNA Methylation
  • Marsupialia
  • Chromosomes
  • Methylation
  • Neoplasms
  18 Citations (Scopus)

  4 Downloads (Pure)

• High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps

  GEORGES, A., Li, Q., Lian, J., O'Meally, D., DEAKIN, J., Wang, Z., Zhang, P., Fujita, M., Patel, H., Zhou, Y., MATSUBARA, K., Waters, P., Graves, J., SARRE, S. & Zhang, G., 2015, In: Giga Science. 4, 1, p. 1-10 10 p., 45.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Lizards
  • Genes
  • Genome
  • Reptiles
  • Scaffolds
  50 Citations (Scopus)

  4 Downloads (Pure)

• Immunofluorescent staining reveals hypermethylation of microchromosomes in the central bearded dragon, Pogona vitticeps

  DOMASCHENZ, R., Livernois, A., RAO, S., EZAZ, T. & DEAKIN, J., 2015, In: Molecular Cytogenetics. 8, 1, p. 104-112 9 p., 104.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Chromosomes
  • DNA Methylation
  • Histones
  • Genes
  • Macros
  3 Citations (Scopus)

  3 Downloads (Pure)

• Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage

  Papenfuss, A., Feng, Z-P., Krasnec, K., DEAKIN, J., Baker, M. & Miller, R., 2015, In: BMC Genomics. 16, 1, p. 1-13 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Marsupialia
  • Eutheria
  • MHC Class I Genes
  • Major Histocompatibility Complex
  • Genome
  10 Citations (Scopus)

  5 Downloads (Pure)
• 2014

  Comparative epigenomics: an emerging field with breakthrough potential to understand evolution of epigenetic regulation

  DEAKIN, J., DOMASCHENZ, R., LIM, C., EZAZ, T. & RAO, S., 2014, In: AIMS Genetics. 1, 1, p. 34-54 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • epigenetics
  • X chromosome
  • immune system
  • mammals
  • genes
  4 Downloads (Pure)

• Comparative Genome Analyses Reveal Distinct Structure in the Saltwater Crocodile MHC

  Jaratlerdsiri, W., DEAKIN, J., Godinez.M, R., Shan, X., Peterson, D., Marthey, S., Lyons, E., McCarthy, F., Isberg, S., Higgins, D., Chong, A., St John, J., Glenn, T., Ray, D. A. & Gongora, J., 2014, In: PLoS One. 9, 12, p. 1-33 33 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Crocodylus porosus
  • Alligators and Crocodiles
  • major histocompatibility complex
  • Major Histocompatibility Complex
  • Genes
  10 Citations (Scopus)

  7 Downloads (Pure)

• Pathogenesis and molecular biology of a transmissible tumor in the Tasmanian Devil

  Bender, H., Marshall Graves, J. & DEAKIN, J., 2014, In: Annual Review of Animal Biosciences. 2, p. 165-187 23 p.

  Research output: Contribution to journal › Article › peer-review

  • Sarcophilus harrisii
  • molecular biology
  • pathogenesis
  • Molecular Biology
  • neoplasms
  13 Citations (Scopus)

• Repetitive sequence and sex chromosome evolution in vertebrates

  EZAZ, T. & DEAKIN, J., 2014, In: Advances in Evolutionary Biology. 2014, 1, p. 1-9 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • repetitive sequences
  • sex chromosomes
  • vertebrates
  • W chromosome
  • Y chromosome
  5 Downloads (Pure)

• Tracing the evolution of amniote chromosomes

  DEAKIN, J. & EZAZ, T., 2014, In: Chromosoma. 123, 3, p. 201-216 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Chromosome Painting
  • Chromosomes
  • Genome
  • Karyotype
  • Population Biological Variation
  12 Citations (Scopus)

  17 Downloads (Pure)
• 2013

  Exceptionally high conservation of the MHC class I-related gene, MR1, among mammals

  Tsukamoto, K., Deakin, J., Marshall Graves, J. & Hashimoto, K., 2013, In: Immunogenetics. 65, p. 115-124 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Marsupialia
  • MHC Class I Genes
  • Major Histocompatibility Complex
  • Mammals
  • Eutheria
  56 Citations (Scopus)

• Genome Sequence of an Australian Kangaroo, Macropus eugenii

  Deakin, J., 2013, Encyclopedia of life sciences. O'Daly, A. (ed.). United Kingdom: John Wiley & Sons, p. 1-25 25 p.

  Research output: A Conference proceeding or a Chapter in Book › Chapter

• Independent Evolution of Transcriptional Inactivation on Sex Chromosomes in Birds and Mammals

  Livernois, A., Waters, S., Deakin, J., Marshall Graves, J. & Waters, P., 2013, In: PLoS Genetics. 9, 7, p. 1-9 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Sex Chromosomes
  • sex chromosomes
  • Birds
  • chromosome
  • Mammals
  19 Citations (Scopus)

  8 Downloads (Pure)

• In Vivo Function and Evolution of the Eutherian-Specific Pluripotency Marker UTF1

  Nishimoto, M., Katano, M., Yamagishi, T., Hishida, T., Kamon, M., Suzuki, A., Hirasaki, M., Nabeshima, Y., Nabeshima, Y., Katsura, Y., Satta, Y., Deakin, J., Marshall Graves, J., Kuroki, Y., Ono, R., Ishino, F., Ema, M., Takahashi, S., Kato, H. & Okuda, A., 2013, In: PLoS One. 8, p. 1-14 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Eutheria
  • Genes
  • Mammals
  • mammals
  • genes
  10 Citations (Scopus)

  8 Downloads (Pure)

• Marsupial X chromosome inactivation: past, present and future

  Deakin, J., 2013, In: Australian Journal of Zoology. 61, p. 13-23 11 p.

  Research output: Contribution to journal › Article › peer-review

  • marsupial
  • Metatheria
  • X chromosome
  • chromosome
  • gene
  5 Citations (Scopus)

• Reconstruction of the ancestral marsupial karyotype from comparative gene maps

  DEAKIN, J., Delbridge, M. L., Koina, E., Harley, N., Alsop, A. E., Wang, C., Patel, V. S. & Graves, J. A. M., 2013, In: BMC Evolutionary Biology. 13:258, p. 1-15 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • karyotype
  • marsupial
  • Metatheria
  • genome
  • karyotyping
  18 Citations (Scopus)

• Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1

  EZAZ, T., O'Meally, D., MATSUBARA, K., Edwards, M., HOLLELEY, C., DEAKIN, J., Graves, J., GEORGES, A., Edwards, S. V. & SARRE, S., 2013, In: BMC Genomics. 14:899, p. 1-13 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • vpr Genes
  • Lizards
  • Sex Chromosomes
  • Reptiles
  • Genes
  29 Citations (Scopus)

  7 Downloads (Pure)

• Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

  Mould, A., Pang, Z., Pakusch, M., Tonks, I., Stark, M., Carrie, D., Mukhopadhyay, P., Seidel, A., Ellis, J., Deakin, J., Wakefield, M., Krause, L., Blewitt, M. & Kay, G., 2013, In: Epigenetics and Chromatin. 6:19, p. 1-16 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • X Chromosome Inactivation
  • Multigene Family
  • Genetic Background
  • Genes
  • Epigenomics
  56 Citations (Scopus)

  2 Downloads (Pure)

• The Evolution of Mammalian X Chromosomes and X Chromosome Inactivation

  Delgado, C. & Deakin, J., 2013, Sex Chromosomes: New Research. D'Aquino, M. & Stallone, V. (eds.). New York: Nova Science Publishers, p. 1-52 52 p.

  Research output: A Conference proceeding or a Chapter in Book › Chapter

• The marsupial pouch: implications for reproductive success and mammalian evolution

  Edwards, M. & Deakin, J., 2013, In: Australian Journal of Zoology. 61, p. 41-47 7 p.

  Research output: Contribution to journal › Article › peer-review

  • marsupial
  • reproductive success
  • Metatheria
  • pouches
  • young
  8 Citations (Scopus)

• Towards an understanding of the genetic basis behind 1080 (sodium fluoroacetate) tolerance and an investigation of the candidate gene ACO2

  Deakin, J., Cooper, D., Sinclair, J., Herbert, C., Renfree, M. & Wakefield, M., 2013, In: Australian Journal of Zoology. 61, p. 69-77 9 p.

  Research output: Contribution to journal › Article › peer-review

  • sodium fluoroacetate
  • Macropus eugenii
  • subspecies
  • aconitate hydratase
  • tolerance
  3 Citations (Scopus)
• 2011

  A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map

  Wang, C., Deakin, J., Rens, W., Zenger, K., Belov, K., Marshall Graves, J. & Nicholas, F., 2011, In: BMC Genomics. 12:422, p. 1-12 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Macropodidae
  • Genome
  • Opossums
  • Chromosomes
  • Monodelphis
  13 Citations (Scopus)

• A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)

  Wang, C., Webley, L., Wei, K., Wakefield, M., Patel, H., Deakin, J., Alsop, A., Marshall Graves, J., Cooper, D., Nicholas, F. & Zenger, K., 2011, In: BMC Genetics. 12:72, p. 1-16 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Macropodidae
  • Genetic Linkage
  • Genome
  • Fluorescence In Situ Hybridization
  • Chromosomes
  9 Citations (Scopus)

  3 Downloads (Pure)

• BAC Libraries: Precious Resources for Marsupial and Monotreme Comparative Genomics

  Deakin, J., 2011, Bacterial Artificial Chromosomes. Chatterjee, P. (ed.). Croatia: In-Tech, p. 1-22 22 p.

  Research output: A Conference proceeding or a Chapter in Book › Chapter

  Open Access

  File

  • bacterial artificial chromosomes
  • Metatheria
  • mammals
  • genomics
  • genome
  7 Downloads (Pure)

• Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

  Renfree, M. B., Papenfuss, A., DEAKIN, J., Lindsay, J., Heider, T., Belov, K., Rens, W., Waters, P., Pharo, E., Shaw, G., Wong, E., Lefevre, C., Nicholas, K. R., Kuroki, Y., Wakefield, M., Zenger, K., Wang, C., Ferguson-Smith, M., Nicholas, F., Hickford, D. & 83 others, Yu, H., Short, K. R., Siddle, H., Frankenberg, S., Chew, K., Menzies, B., Stringer, J., Suzuki, S., Hore, T., Delbridge, M. L., Mohammadi, A., Schneider, N., Hu, Y., O'Hara, W., Nadaf, S., Wu, C., Feng, Z-P., Cocks, B., Wang, J., Flicek, P., Searle, S., Fairley, S., Beal, K., Herrero, J., Carone, D., Suzuki, Y., Sugano, S., Toyoda, A., Sakaki, Y., Kondo, S., Nishida, Y., Tatsumoto, S., Mandiou, I., Hsu, A., McColl, K., Lansdell, B., Weinstock, G., Kuczek, E., McGrath, A., Wilson, P., Men, A., Hazar-Rethinam, M., Hall, A., Davis, J., Wood, D., Williams, S., Sundaravadanam, Y., Muzny, D., Jhangiani, S., Lewis, L., Morgan, M., Okwuonu, G., Ruiz, S., Santibanez, J., Nazareth, L., Cree, A., Fowler, G., Kovar, C., Dinh, H., Joshi, V., Jing, C., Lara, F., Thornton, R., Chen, L., Deng, J., Liu, Y., Shen, J., Song, X-Z., Edson, J., Troon, C., Thomas, D., Stephens, A., Yapa, L., Levchenko, T., Gibbs, R. A., Cooper, D., Speed, T., Fujiyama, A., Graves, J. A. M., O’Neill, R., Pask, A., Forrest, S. & Worley, K., 2011, In: Genome Biology. 12:R81, p. 1-25 25 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Macropodidae
  • Macropus eugenii
  • Marsupialia
  • marsupial
  • Reproduction
  121 Citations (Scopus)

  3 Downloads (Pure)

• Physical Mapping of Innate Immune Genes, Mucins and Lysozymes, and Other Non-Mucin Proteins in the Tammar Wallaby (Macropus eugenii)

  Edwards, M., Hinds, L., Deane, E. & Deakin, J., 2011, In: Cytogenetic and Genome Research. 135, 2, p. 118-125 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Macropodidae
  • Muramidase
  • Mucins
  • Genome
  • Genes
  3 Citations (Scopus)

• The tammar wallaby major histocompatibility complex shows evidence of past genomic instability

  Siddle, H., Deakin, J., Coggill, P., Whilming, L., Harrow, J., Kaufman, J., Beck, S. & Belov, K., 2011, In: BMC Genomics. 12:421, p. 1-15 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Macropodidae
  • Genomic Instability
  • Major Histocompatibility Complex
  • Genes
  • Marsupialia
  23 Citations (Scopus)

  4 Downloads (Pure)