TY - JOUR
T1 - Associations detected between measures of neighborhood environmental conditions and human microbiome diversity
AU - Pearson, Amber L.
AU - Pechal, Jennifer
AU - Lin, Zihan
AU - Benbow, M. Eric
AU - Schmidt, Carl
AU - Mavoa, Suzanne
N1 - Funding Information:
This research was funded, in part, by a grant from the National Institute of Justice, Office of Justice Programs, U.S. Department of Justice awarded ( 2014-DN-BX-K008 ) to J.L.P, C.J.S., H.R.J., and M.E.B. Points of view in this document are those of the authors and do not necessarily represent the official position or policies of the U.S. Department of Justice or Department of Defense. SM is supported by an Australian National Health and Medical Research Council Early Career Fellowship (# 1121035 ). The authors wish to thank Dr. Victoria Breeze and Diana Temple with figure creation assistance.
Publisher Copyright:
© 2020
PY - 2020/11/25
Y1 - 2020/11/25
N2 - While emerging research suggests urban green space revegetation increases soil microbiota diversity and native plant species affect skin microbiome diversity, there is still a paucity of knowledge on relationships between neighborhood environmental conditions and the human microbiome. This study leveraged data on human microbiome samples (nose, mouth, rectum) taken at autopsy at the Wayne County Medical Examiner's Office (2014–2015). We evaluated relationships between the microbiome and five measures of environmental conditions (NDVI standard deviation, NDVI mean, percent trees, percent grassland and soil type) near the home of 126 decedents. For the rectum microbiome, NDVI sd had negative, significant associations with diversity (ASVs β = −0.20, p = 0.045; Faith PD β = −0.22, p = 0.026). In contrast, while insignificant, there were consistent, positive associations between diversity and NDVI sd for the mouth microbiome (ASVs β = 0.09, p = 0.337, Faith PD β = 0.14, p = 0.149, Shannon diversity β = 0.14, p = 0.159, Heip's evenness β = 0.11, p = 0.259) and a significant association for the nose microbiome (eigenvalues 3 β = 0.18, p = 0.057). We found consistent, significant, negative associations between percent grassland and diversity of the nose microbiome (ASVs β = −0.25, p = 0.008, Faith PD β = −0.25, p = 0.009, Shannon diversity β = −0.17, p = 0.062). For the mouth microbiome, we found a small effect of percent trees on diversity (eigenvalues 1 β = −0.08, p = 0.053). Clay loam soil was negatively (eigenvalues 2 β = −0.47, p = 0.053) and positively associated (eigenvalues 3 β = 0.65, p = 0.008) with rectum microbiome diversity, compared to loam soil. There was no potential indicator taxon among NDVI quartiles. These findings may be relevant for urban planning and management of urban outdoor spaces in ways that may support healthy human microbiomes. Still, future research is needed to link variation in NDVI, vegetation, plant and/or soil microbe diversity and to confirm or negate our findings that environmental conditions may have contrasting influence on the microbiome of the rectum versus the nose and mouth and that grasslands affect the nose microbiome.
AB - While emerging research suggests urban green space revegetation increases soil microbiota diversity and native plant species affect skin microbiome diversity, there is still a paucity of knowledge on relationships between neighborhood environmental conditions and the human microbiome. This study leveraged data on human microbiome samples (nose, mouth, rectum) taken at autopsy at the Wayne County Medical Examiner's Office (2014–2015). We evaluated relationships between the microbiome and five measures of environmental conditions (NDVI standard deviation, NDVI mean, percent trees, percent grassland and soil type) near the home of 126 decedents. For the rectum microbiome, NDVI sd had negative, significant associations with diversity (ASVs β = −0.20, p = 0.045; Faith PD β = −0.22, p = 0.026). In contrast, while insignificant, there were consistent, positive associations between diversity and NDVI sd for the mouth microbiome (ASVs β = 0.09, p = 0.337, Faith PD β = 0.14, p = 0.149, Shannon diversity β = 0.14, p = 0.159, Heip's evenness β = 0.11, p = 0.259) and a significant association for the nose microbiome (eigenvalues 3 β = 0.18, p = 0.057). We found consistent, significant, negative associations between percent grassland and diversity of the nose microbiome (ASVs β = −0.25, p = 0.008, Faith PD β = −0.25, p = 0.009, Shannon diversity β = −0.17, p = 0.062). For the mouth microbiome, we found a small effect of percent trees on diversity (eigenvalues 1 β = −0.08, p = 0.053). Clay loam soil was negatively (eigenvalues 2 β = −0.47, p = 0.053) and positively associated (eigenvalues 3 β = 0.65, p = 0.008) with rectum microbiome diversity, compared to loam soil. There was no potential indicator taxon among NDVI quartiles. These findings may be relevant for urban planning and management of urban outdoor spaces in ways that may support healthy human microbiomes. Still, future research is needed to link variation in NDVI, vegetation, plant and/or soil microbe diversity and to confirm or negate our findings that environmental conditions may have contrasting influence on the microbiome of the rectum versus the nose and mouth and that grasslands affect the nose microbiome.
KW - Detroit
KW - Green space
KW - Microbial communities
KW - NDVI
KW - Neighborhoods
KW - Urban
UR - http://www.scopus.com/inward/record.url?scp=85088451850&partnerID=8YFLogxK
U2 - 10.1016/j.scitotenv.2020.141029
DO - 10.1016/j.scitotenv.2020.141029
M3 - Article
C2 - 32721621
AN - SCOPUS:85088451850
SN - 0048-9697
VL - 745
SP - 1
EP - 10
JO - Science of the Total Environment
JF - Science of the Total Environment
M1 - 141029
ER -
