TY - JOUR
T1 - Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trial
AU - Min, Hang
AU - Dowling, Jason
AU - Jameson, Michael G.
AU - Cloak, Kirrily
AU - Faustino, Joselle
AU - Sidhom, Mark
AU - Martin, Jarad
AU - Ebert, Martin A.
AU - Haworth, Annette
AU - Chlap, Phillip
AU - De Leon, Jeremiah
AU - Berry, Megan
AU - Pryor, David
AU - Greer, Peter
AU - Vinod, Shalini K.
AU - Holloway, Lois
N1 - Publisher Copyright:
© 2021 Institute of Physics and Engineering in Medicine.
PY - 2021/10/7
Y1 - 2021/10/7
N2 - Volume delineation quality assurance (QA) is particularly important in clinical trial settings where consistent protocol implementation is required, as outcomes will affect future as well current patients. Currently, where feasible, this is conducted manually, which is time consuming and resource intensive. Although previous studies mostly focused on automating delineation QA on CT, magnetic resonance imaging (MRI) is being increasingly used in radiotherapy treatment. In this work, we propose to perform automatic delineation QA on prostate MRI for both the clinical target volume (CTV) and organs-at-risk (OARs) by using delineations generated by 3D Unet variants as benchmarks for QA. These networks were trained on a small gold standard atlas set and applied on a multicentre radiotherapy clinical trial dataset to generate benchmark delineations. Then, a QA stage was designed to recommend 'pass', 'minor correction' and 'major correction' for each manual delineation in the trial set by thresholding its Dice similarity coefficient to the network generated delineation. Among all 3D Unet variants explored, the Unet with anatomical gates in an AtlasNet architecture performed the best in delineation QA, achieving an area under the receiver operating characteristics curve of 0.97, 0.92, 0.89 and 0.97 for identifying unacceptable (major correction) delineations with a sensitivity of 0.93, 0.73, 0.74 and 0.90 at a specificity of 0.93, 0.86, 0.86 and 0.95 for bladder, prostate CTV, rectum and gel spacer respectively. To the best of our knowledge, this is the first study to propose automated delineation QA for a multicentre radiotherapy clinical trial with treatment planning MRI. The methods proposed in this work can potentially improve the accuracy and consistency of CTV and OAR delineation in radiotherapy treatment planning.
AB - Volume delineation quality assurance (QA) is particularly important in clinical trial settings where consistent protocol implementation is required, as outcomes will affect future as well current patients. Currently, where feasible, this is conducted manually, which is time consuming and resource intensive. Although previous studies mostly focused on automating delineation QA on CT, magnetic resonance imaging (MRI) is being increasingly used in radiotherapy treatment. In this work, we propose to perform automatic delineation QA on prostate MRI for both the clinical target volume (CTV) and organs-at-risk (OARs) by using delineations generated by 3D Unet variants as benchmarks for QA. These networks were trained on a small gold standard atlas set and applied on a multicentre radiotherapy clinical trial dataset to generate benchmark delineations. Then, a QA stage was designed to recommend 'pass', 'minor correction' and 'major correction' for each manual delineation in the trial set by thresholding its Dice similarity coefficient to the network generated delineation. Among all 3D Unet variants explored, the Unet with anatomical gates in an AtlasNet architecture performed the best in delineation QA, achieving an area under the receiver operating characteristics curve of 0.97, 0.92, 0.89 and 0.97 for identifying unacceptable (major correction) delineations with a sensitivity of 0.93, 0.73, 0.74 and 0.90 at a specificity of 0.93, 0.86, 0.86 and 0.95 for bladder, prostate CTV, rectum and gel spacer respectively. To the best of our knowledge, this is the first study to propose automated delineation QA for a multicentre radiotherapy clinical trial with treatment planning MRI. The methods proposed in this work can potentially improve the accuracy and consistency of CTV and OAR delineation in radiotherapy treatment planning.
KW - deep learning
KW - delineation quality assurance
KW - MRI
KW - multicentre clinical trial
KW - radiotherapy
UR - http://www.scopus.com/inward/record.url?scp=85116592017&partnerID=8YFLogxK
U2 - 10.1088/1361-6560/ac25d5
DO - 10.1088/1361-6560/ac25d5
M3 - Article
C2 - 34507305
AN - SCOPUS:85116592017
SN - 0031-9155
VL - 66
SP - 1
EP - 15
JO - Physics in Medicine and Biology
JF - Physics in Medicine and Biology
IS - 19
M1 - 195008
ER -