Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner

Robert Phan; Thoai Man Luu; Rachel Davey; Girija Chetty

doi:10.1109/icmlde.2018.00032

Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner

Robert Phan, Thoai Man Luu, Rachel Davey, Girija Chetty

Research output: A Conference proceeding or a Chapter in Book › Conference contribution › peer-review

4 Citations (Scopus)

Abstract

This current research presents an inventive multilevel named entity recognition scheme for explaining the confrontation with biomedical entity recognition which based on divergent algorithms. The presented scheme contains multilevels, which enables Biomedical entity recognition tasks to extract and identify important biomedical concept: DNA, RNA, CELL-LINE, CELL-TYPE, PROTEIN, and O classes with ease. The BioNLP/NLPBPA 2004 challenge datasets have been used and evaluated, resulted in promising outcomes in terms of biomedical recognition model performance.

Original language	English
Title of host publication	Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018)
Editors	Phill Kyu Rhee, Daniel Howard, Rezaul Bashar
Place of Publication	United States
Publisher	IEEE, Institute of Electrical and Electronics Engineers
Pages	128-135
Number of pages	8
ISBN (Electronic)	9781728104041
ISBN (Print)	9781728104058
DOIs	https://doi.org/10.1109/icmlde.2018.00032
Publication status	Published - 15 Jan 2019
Event	International Conference on Machine Learning and Data Engineering 2018: iCMLDE 2018 - Western Sydney University, Sydney, Australia Duration: 3 Dec 2018 → 7 Dec 2018 http://www.icmlde.net.au/Home.aspx

Publication series

Name	Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018

Conference

Conference	International Conference on Machine Learning and Data Engineering 2018
Country/Territory	Australia
City	Sydney
Period	3/12/18 → 7/12/18
Internet address	http://www.icmlde.net.au/Home.aspx

Access to Document

10.1109/icmlde.2018.00032

Cite this

Phan, R., Luu, T. M., Davey, R., & Chetty, G. (2019). Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner. In P. K. Rhee, D. Howard, & R. Bashar (Eds.), Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018) (pp. 128-135). [8614015] (Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018). IEEE, Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/icmlde.2018.00032

Phan, Robert ; Luu, Thoai Man ; Davey, Rachel et al. / Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner. Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018). editor / Phill Kyu Rhee ; Daniel Howard ; Rezaul Bashar. United States : IEEE, Institute of Electrical and Electronics Engineers, 2019. pp. 128-135 (Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018).

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title = "Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner",

abstract = "This current research presents an inventive multilevel named entity recognition scheme for explaining the confrontation with biomedical entity recognition which based on divergent algorithms. The presented scheme contains multilevels, which enables Biomedical entity recognition tasks to extract and identify important biomedical concept: DNA, RNA, CELL-LINE, CELL-TYPE, PROTEIN, and O classes with ease. The BioNLP/NLPBPA 2004 challenge datasets have been used and evaluated, resulted in promising outcomes in terms of biomedical recognition model performance.",

keywords = "Biomedical, Conditional Random Field, Named Entity Recognition, Natural Language Processing, Regular Expression, Term Frequency-Invert Document Frequency, Text Features, Word2Vec",

author = "Robert Phan and Luu, {Thoai Man} and Rachel Davey and Girija Chetty",

note = "Publisher Copyright: {\textcopyright} 2018 IEEE. Copyright: Copyright 2019 Elsevier B.V., All rights reserved.; International Conference on Machine Learning and Data Engineering 2018 : iCMLDE 2018 ; Conference date: 03-12-2018 Through 07-12-2018",

year = "2019",

month = jan,

day = "15",

doi = "10.1109/icmlde.2018.00032",

language = "English",

isbn = "9781728104058",

series = "Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018",

publisher = "IEEE, Institute of Electrical and Electronics Engineers",

pages = "128--135",

editor = "Rhee, {Phill Kyu} and Daniel Howard and Rezaul Bashar",

booktitle = "Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018)",

address = "United States",

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Phan, R, Luu, TM, Davey, R & Chetty, G 2019, Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner. in PK Rhee, D Howard & R Bashar (eds), Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018)., 8614015, Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018, IEEE, Institute of Electrical and Electronics Engineers, United States, pp. 128-135, International Conference on Machine Learning and Data Engineering 2018, Sydney, New South Wales, Australia, 3/12/18. https://doi.org/10.1109/icmlde.2018.00032

Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner. / Phan, Robert; Luu, Thoai Man; Davey, Rachel et al.
Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018). ed. / Phill Kyu Rhee; Daniel Howard; Rezaul Bashar. United States: IEEE, Institute of Electrical and Electronics Engineers, 2019. p. 128-135 8614015 (Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018).

Research output: A Conference proceeding or a Chapter in Book › Conference contribution › peer-review

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T1 - Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner

AU - Phan, Robert

AU - Luu, Thoai Man

AU - Davey, Rachel

AU - Chetty, Girija

PY - 2019/1/15

Y1 - 2019/1/15

N2 - This current research presents an inventive multilevel named entity recognition scheme for explaining the confrontation with biomedical entity recognition which based on divergent algorithms. The presented scheme contains multilevels, which enables Biomedical entity recognition tasks to extract and identify important biomedical concept: DNA, RNA, CELL-LINE, CELL-TYPE, PROTEIN, and O classes with ease. The BioNLP/NLPBPA 2004 challenge datasets have been used and evaluated, resulted in promising outcomes in terms of biomedical recognition model performance.

AB - This current research presents an inventive multilevel named entity recognition scheme for explaining the confrontation with biomedical entity recognition which based on divergent algorithms. The presented scheme contains multilevels, which enables Biomedical entity recognition tasks to extract and identify important biomedical concept: DNA, RNA, CELL-LINE, CELL-TYPE, PROTEIN, and O classes with ease. The BioNLP/NLPBPA 2004 challenge datasets have been used and evaluated, resulted in promising outcomes in terms of biomedical recognition model performance.

KW - Biomedical

KW - Conditional Random Field

KW - Named Entity Recognition

KW - Natural Language Processing

KW - Regular Expression

KW - Term Frequency-Invert Document Frequency

KW - Text Features

KW - Word2Vec

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DO - 10.1109/icmlde.2018.00032

M3 - Conference contribution

SN - 9781728104058

T3 - Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018

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BT - Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018)

A2 - Rhee, Phill Kyu

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PB - IEEE, Institute of Electrical and Electronics Engineers

CY - United States

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Phan R, Luu TM, Davey R , Chetty G. Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner. In Rhee PK, Howard D, Bashar R, editors, Proceedings International Conference on Machine Learning and Data Engineering (iCMLDE 2018). United States: IEEE, Institute of Electrical and Electronics Engineers. 2019. p. 128-135. 8614015. (Proceedings - International Conference on Machine Learning and Data Engineering, iCMLDE 2018). doi: 10.1109/icmlde.2018.00032

Biomedical Named Entity Recognition Based on Hybrid Multistage CNN-RNN Learner

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