Comparative phylodynamics of rabbit hemorrhagic disease virus in Australia and New Zealand

J Eden, John Kovaliski, Janine Duckworth, G Swain, J Mahar, Tanja Strive, Edward Holmes

Research output: Contribution to journalArticle

18 Citations (Scopus)

Abstract

The introduction of rabbit hemorrhagic disease virus (RHDV) into Australia and New Zealand during the 1990s as a means of controlling feral rabbits is an important case study in viral emergence. Both epidemics are exceptional in that the founder viruses share an origin and the timing of their release is known, providing a unique opportunity to compare the evolution of a single virus in distinct naive populations. We examined the evolution and spread of RHDV in Australia and New Zealand through a genome-wide evolutionary analysis, including data from 28 newly sequenced RHDV field isolates. Following the release of the Australian inoculum strain into New Zealand, no subsequent mixing of the populations occurred, with viruses from both countries forming distinct groups. Strikingly, the rate of evolution in the capsid gene was higher in the Australian viruses than in those from New Zealand, most likely due to the presence of transient deleterious mutations in the former. However, estimates of both substitution rates and population dynamics were strongly sample dependent, such that small changes in sample composition had an important impact on evolutionary parameters. Phylogeographic analysis revealed a clear spatial structure in the Australian RHDV strains, with a major division between those viruses from western and eastern states. Importantly, RHDV sequences from the state where the virus was first released, South Australia, had the greatest diversity and were diffuse throughout both geographic lineages, such that this region was likely a source population for the subsequent spread of the virus across the country.
Original languageEnglish
Pages (from-to)9548-9558
Number of pages11
JournalJournal of Virology
Volume89
Issue number18
DOIs
Publication statusPublished - 2015

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Rabbit Haemorrhagic Disease Virus
Rabbit hemorrhagic disease virus
New Zealand
Viruses
viruses
Population
South Australia
capsid
Capsid
Population Dynamics
data analysis
inoculum
population dynamics
rabbits
Genome
Rabbits
case studies
mutation
sampling
Mutation

Cite this

Eden, J., Kovaliski, J., Duckworth, J., Swain, G., Mahar, J., Strive, T., & Holmes, E. (2015). Comparative phylodynamics of rabbit hemorrhagic disease virus in Australia and New Zealand. Journal of Virology, 89(18), 9548-9558. https://doi.org/10.1128/JVI.01100-15
Eden, J ; Kovaliski, John ; Duckworth, Janine ; Swain, G ; Mahar, J ; Strive, Tanja ; Holmes, Edward. / Comparative phylodynamics of rabbit hemorrhagic disease virus in Australia and New Zealand. In: Journal of Virology. 2015 ; Vol. 89, No. 18. pp. 9548-9558.
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Eden, J, Kovaliski, J, Duckworth, J, Swain, G, Mahar, J, Strive, T & Holmes, E 2015, 'Comparative phylodynamics of rabbit hemorrhagic disease virus in Australia and New Zealand', Journal of Virology, vol. 89, no. 18, pp. 9548-9558. https://doi.org/10.1128/JVI.01100-15

Comparative phylodynamics of rabbit hemorrhagic disease virus in Australia and New Zealand. / Eden, J; Kovaliski, John; Duckworth, Janine; Swain, G; Mahar, J; Strive, Tanja; Holmes, Edward.

In: Journal of Virology, Vol. 89, No. 18, 2015, p. 9548-9558.

Research output: Contribution to journalArticle

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T1 - Comparative phylodynamics of rabbit hemorrhagic disease virus in Australia and New Zealand

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AU - Kovaliski, John

AU - Duckworth, Janine

AU - Swain, G

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AU - Strive, Tanja

AU - Holmes, Edward

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KW - Humans

KW - New Zealand/epidemiology

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