TY - JOUR
T1 - Localised delineation uncertainty for iterative atlas selection in automatic cardiac segmentation
AU - Finnegan, Robert
AU - Lorenzen, Ebbe
AU - Dowling, Jason
AU - Holloway, Lois
AU - Thwaites, David
AU - Brink, Carsten
N1 - Publisher Copyright:
© 2020 Institute of Physics and Engineering in Medicine.
PY - 2020/2/4
Y1 - 2020/2/4
N2 - The heart is an important organ at risk during thoracic radiotherapy. Many studies have demonstrated a correlation between the mean heart dose and an increase in cardiovascular disease. Different treatments result in significant dose variation within the heart and individualised dose estimation increasingly requires more attention to delineation of various cardiac structures. Automatic segmentation tools are critical for consistent and accurate delineation of organs at risk in large, retrospective studies, however the challenge of ensuring a robust method must be addressed. In a multi-atlas based segmentation framework the uncertainty in delineation can be modelled over the surface of the heart. We extend this concept with an iterative atlas selection procedure designed to remove inconsistent atlas contours, in turn improving the reliability of the segmentation. Two independent datasets comprising 15 and 20 planning computed tomography (CT) images of Danish and Australian breast cancer patients, respectively, had the whole heart and left anterior descending coronary artery (LADCA) delineated. Using a cross-validation strategy, where each dataset is used as an atlas set to segment each image in the other, we assess segmentation performance qualitatively and quantitatively, using the dice similarity coefficient (DSC), mean surface-to-surface distance (MASD) and Hausdorff distance (HD). After using the iterative atlas selection procedure, every segmentation error was removed. For the whole heart, the resulting segmentation achieved a DSC, MASD and HD of mm, and mm.
AB - The heart is an important organ at risk during thoracic radiotherapy. Many studies have demonstrated a correlation between the mean heart dose and an increase in cardiovascular disease. Different treatments result in significant dose variation within the heart and individualised dose estimation increasingly requires more attention to delineation of various cardiac structures. Automatic segmentation tools are critical for consistent and accurate delineation of organs at risk in large, retrospective studies, however the challenge of ensuring a robust method must be addressed. In a multi-atlas based segmentation framework the uncertainty in delineation can be modelled over the surface of the heart. We extend this concept with an iterative atlas selection procedure designed to remove inconsistent atlas contours, in turn improving the reliability of the segmentation. Two independent datasets comprising 15 and 20 planning computed tomography (CT) images of Danish and Australian breast cancer patients, respectively, had the whole heart and left anterior descending coronary artery (LADCA) delineated. Using a cross-validation strategy, where each dataset is used as an atlas set to segment each image in the other, we assess segmentation performance qualitatively and quantitatively, using the dice similarity coefficient (DSC), mean surface-to-surface distance (MASD) and Hausdorff distance (HD). After using the iterative atlas selection procedure, every segmentation error was removed. For the whole heart, the resulting segmentation achieved a DSC, MASD and HD of mm, and mm.
KW - atlas-based segmentation
KW - heart contouring
KW - medical image processing
KW - whole heart segmentation
UR - http://www.scopus.com/inward/record.url?scp=85079019446&partnerID=8YFLogxK
U2 - 10.1088/1361-6560/ab652a
DO - 10.1088/1361-6560/ab652a
M3 - Article
C2 - 31869823
AN - SCOPUS:85079019446
SN - 0031-9155
VL - 65
SP - 1
EP - 16
JO - Physics in Medicine and Biology
JF - Physics in Medicine and Biology
IS - 3
M1 - 035011
ER -