Short-read fastA files dataset from complexity-reduced genotyping by sequencing data of bacterial isolates from a public hospital in Australia

Berenice Talamantes-Becerra; J. Carling; Karina Kennedy; Michelle E. Gahan; Arthur Georges

doi:10.1016/j.dib.2019.104273

Short-read fastA files dataset from complexity-reduced genotyping by sequencing data of bacterial isolates from a public hospital in Australia

Berenice Talamantes-Becerra, J. Carling, Karina Kennedy, Michelle E. Gahan, Arthur Georges

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Abstract

This data article contains short-read sequences (length 30–69 bp) obtained from complexity-reduced genotyping by sequencing (GBS) of 165 samples bacterial isolates from hospital patients in the Australian Capital Territory, between 2013 and 2015. These samples represented 14 bacterial species. Data format is shown as filtered fastA files obtained from an Illumina HiSeq2500 sequencer. The experimental factors of this research used three complexity reduction methods with three combinations of restriction enzymes: PstI with MseI, PstI with HpaII and MseI with HpaII.

Original language	English
Article number	104273
Pages (from-to)	1-7
Number of pages	7
Journal	Data in Brief
Volume	25
DOIs	https://doi.org/10.1016/j.dib.2019.104273
Publication status	Published - Aug 2019

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ArticleFinal published version, 2.19 MBLicence: CC BY

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title = "Short-read fastA files dataset from complexity-reduced genotyping by sequencing data of bacterial isolates from a public hospital in Australia",

abstract = "This data article contains short-read sequences (length 30–69 bp) obtained from complexity-reduced genotyping by sequencing (GBS) of 165 samples bacterial isolates from hospital patients in the Australian Capital Territory, between 2013 and 2015. These samples represented 14 bacterial species. Data format is shown as filtered fastA files obtained from an Illumina HiSeq2500 sequencer. The experimental factors of this research used three complexity reduction methods with three combinations of restriction enzymes: PstI with MseI, PstI with HpaII and MseI with HpaII.",

keywords = "Bacterial pathogens, Genotyping, Short-read sequences",

author = "Berenice Talamantes-Becerra and J. Carling and Karina Kennedy and Gahan, {Michelle E.} and Arthur Georges",

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AU - Talamantes-Becerra, Berenice

AU - Carling, J.

AU - Kennedy, Karina

AU - Gahan, Michelle E.

AU - Georges, Arthur

PY - 2019/8

Y1 - 2019/8

N2 - This data article contains short-read sequences (length 30–69 bp) obtained from complexity-reduced genotyping by sequencing (GBS) of 165 samples bacterial isolates from hospital patients in the Australian Capital Territory, between 2013 and 2015. These samples represented 14 bacterial species. Data format is shown as filtered fastA files obtained from an Illumina HiSeq2500 sequencer. The experimental factors of this research used three complexity reduction methods with three combinations of restriction enzymes: PstI with MseI, PstI with HpaII and MseI with HpaII.

AB - This data article contains short-read sequences (length 30–69 bp) obtained from complexity-reduced genotyping by sequencing (GBS) of 165 samples bacterial isolates from hospital patients in the Australian Capital Territory, between 2013 and 2015. These samples represented 14 bacterial species. Data format is shown as filtered fastA files obtained from an Illumina HiSeq2500 sequencer. The experimental factors of this research used three complexity reduction methods with three combinations of restriction enzymes: PstI with MseI, PstI with HpaII and MseI with HpaII.

KW - Bacterial pathogens

KW - Genotyping

KW - Short-read sequences

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